Recent Publications from PubMed

• phydms: software for phylogenetic analyses informed by deep mutational scanning.
  Hilton SK, Doud MB, Bloom JD
  PeerJ. 2017 ; 5 : e3657
• Parallel evolution of influenza across multiple spatiotemporal scales.
  Xue KS, Stevens-Ayers T, Campbell AP, Englund JA, Pergam SA, Boeckh M, Bloom JD
  eLife. 2017 Jun; 6 :
• Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site.
  Strauch EM, Bernard SM, La D, Bohn AJ, Lee PS, Anderson CE, Nieusma T, Holstein CA, Garcia NK, Hooper KA, Ravichandran R, Nelson JW, Sheffler W, Bloom JD, Lee KK, Ward AB, Yager P, Fuller DH, Wilson IA, Baker D
  Nature biotechnology. 2017 Jul; 35 7: 667-671
• Comprehensive Mapping of HIV-1 Escape from a Broadly Neutralizing Antibody.
  Dingens AS, Haddox HK, Overbaugh J, Bloom JD
  Cell host & microbe. 2017 Jun; 21 6: 777-787.e4
• Deep mutational scanning identifies sites in influenza nucleoprotein that affect viral inhibition by MxA.
  Ashenberg O, Padmakumar J, Doud MB, Bloom JD
  PLoS pathogens. 2017 Mar; 13 3: e1006288